Karthik’s paper in MRM!
Paper title: Quantitative anatomy mimicking slice phantoms
Abstract: To present a reproducible methodology for building an anatomy mimicking phantom with targeted T1 and T2 contrast for use in quantitative magnetic resonance imaging. We propose a reproducible method for creating high-resolution, quantitative slice phantoms. The phantoms are created using gels with different concentrations of NiCl2 and MnCl2 to achieve targeted T1 and T2 values. We describe a calibration method for accurately targeting anatomically realistic relaxation pairs. In addition, we developed a method of fabricating slice phantoms by extruding 3D printed walls on acrylic sheets. These procedures are combined to create a physical analog of the Brainweb digital phantom. With our method, we are able to target specific T1/T2 values with less than 10% error. Additionally, our slice phantoms look realistic since their geometries are derived from anatomical data. Standardized and accurate tools for validating new techniques across sequences, platforms, and different imaging sites are important. Anatomy mimicking, multi-contrast phantoms designed with our procedures could be used for evaluating, testing, and verifying model-based methods.
Publication:
-
Quantitative anatomy mimicking slice phantoms
Karthik Gopalan,
Jonathan I. Tamir,
Ana C. Arias,
and
Michael Lustig
Magnetic Resonance in Medicine,
2021
86,
2.
[Abstract]
[Bibtex]
[PDF]
To present a reproducible methodology for building an anatomy mimicking phantom with targeted T1 and T2 contrast for use in quantitative magnetic resonance imaging. We propose a reproducible method for creating high-resolution, quantitative slice phantoms. The phantoms are created using gels with different concentrations of NiCl2 and MnCl2 to achieve targeted T1 and T2 values. We describe a calibration method for accurately targeting anatomically realistic relaxation pairs. In addition, we developed a method of fabricating slice phantoms by extruding 3D printed walls on acrylic sheets. These procedures are combined to create a physical analog of the Brainweb digital phantom. With our method, we are able to target specific T1/T2 values with less than 10% error. Additionally, our slice phantoms look realistic since their geometries are derived from anatomical data. Standardized and accurate tools for validating new techniques across sequences, platforms, and different imaging sites are important. Anatomy mimicking, multi-contrast phantoms designed with our procedures could be used for evaluating, testing, and verifying model-based methods.
@article{Karthik_phantom,
author = {Gopalan, Karthik and Tamir, Jonathan I. and Arias, Ana C. and Lustig, Michael},
title = {Quantitative anatomy mimicking slice phantoms},
year = {2021},
doi = {10.1002/mrm.28740},
publisher = {Wiley Online Library},
url = {https://onlinelibrary.wiley.com/doi/10.1002/mrm.28740},
journal = {Magnetic Resonance in Medicine},
volume = {86},
number = {2},
thumbnail = {karthik2021phantom.png},
pdf = {karthik2021phantom.pdf}
}
